3D structure

PDB id
9G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
GUUCAAAUC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9G6J_112 not in the Motif Atlas
Homologous match to HL_5AH5_008
Geometric discrepancy: 0.1093
The information below is about HL_5AH5_008
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

9G6J|1|PT|G|54
9G6J|1|PT|U|55
9G6J|1|PT|U|56
9G6J|1|PT|C|57
9G6J|1|PT|A|58
9G6J|1|PT|A|59
9G6J|1|PT|A|60
9G6J|1|PT|U|61
9G6J|1|PT|C|62

Current chains

Chain PT
tRNA-fMet

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain AP
Ribosomal 60S subunit protein L42A
Chain s
Ribosomal 60S subunit protein L11B

Coloring options:


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