HL_9G6J_112
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G6J_112 not in the Motif Atlas
- Homologous match to HL_5AH5_008
- Geometric discrepancy: 0.1093
- The information below is about HL_5AH5_008
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
9G6J|1|PT|G|54
9G6J|1|PT|U|55
9G6J|1|PT|U|56
9G6J|1|PT|C|57
9G6J|1|PT|A|58
9G6J|1|PT|A|59
9G6J|1|PT|A|60
9G6J|1|PT|U|61
9G6J|1|PT|C|62
Current chains
- Chain PT
- tRNA-fMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AP
- Ribosomal 60S subunit protein L42A
- Chain s
- Ribosomal 60S subunit protein L11B
Coloring options: