HL_9G6J_112

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUUCAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_112 not in the Motif Atlas

Homologous match to HL_5AH5_008

Geometric discrepancy: 0.1093

The information below is about HL_5AH5_008

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9G6J|1|PT|G|54
9G6J|1|PT|U|55
9G6J|1|PT|U|56
9G6J|1|PT|C|57
9G6J|1|PT|A|58
9G6J|1|PT|A|59
9G6J|1|PT|A|60
9G6J|1|PT|U|61
9G6J|1|PT|C|62

Current chains

Chain PT

tRNA-fMet

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AP

Ribosomal 60S subunit protein L42A

Chain s

Ribosomal 60S subunit protein L11B