HL_9G7C_005

3D structure

PDB id

9G7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of raiA ncRNA from Clostridium reveals a new RNA 3D fold

Experimental method

ELECTRON MICROSCOPY

Resolution

3.27 Å

Loop

Sequence

CAGUCGCAG

Length

9 nucleotides

Bulged bases

9G7C|2|A|A|33

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G7C_005 not in the Motif Atlas

Geometric match to HL_3G9C_007

Geometric discrepancy: 0.1591

The information below is about HL_3G9C_007

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

9G7C|2|A|C|32
9G7C|2|A|A|33
9G7C|2|A|G|34
9G7C|2|A|U|35
9G7C|2|A|C|36
9G7C|2|A|G|37
9G7C|2|A|C|38
9G7C|2|A|A|39
9G7C|2|A|G|40

Current chains

Chain A

raiA (224-MER)

Nearby chains