9G7C Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9G7C_001 | 1/A/32:40 | Pseudoknot geometry | geometric HL_3G9C_007 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9G7C_002 | No text annotation | ||
| HL_9G7C_003 | tRNA anticodon loop | ||
| HL_9G7C_004 | No text annotation | ||
| HL_9G7C_021 | Other HL | ||
| HL_9G7C_005 | Pseudoknot geometry | ||
| HL_9G7C_006 | No text annotation | ||
| HL_9G7C_007 | GNRA with tandem sheared | ||
| HL_9G7C_008 | No text annotation | ||
| HL_9G7C_009 | Pseudoknot geometry | ||
| HL_9G7C_010 | No text annotation | ||
| HL_9G7C_011 | No text annotation | ||
| HL_9G7C_022 | GNRA with extra near cWW | ||
| HL_9G7C_012 | No text annotation | ||
| HL_9G7C_013 | Pseudoknot geometry | ||
| HL_9G7C_014 | No text annotation | ||
| HL_9G7C_015 | Anticodon loop related | ||
| HL_9G7C_016 | Other HL | ||
| HL_9G7C_017 | Pseudoknot geometry | ||
| HL_9G7C_018 | No text annotation | ||
| HL_9G7C_019 | tRNA anticodon loop | ||
| HL_9G7C_020 | Other HL |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9G7C_032 | 1/A/9:12, 1/A/215:216 | Major groove intercalation | geometric IL_1U9S_003 IL_71421.5 | |
| IL_9G7C_033 | 1/A/14:15, 1/A/209:213 | No text annotation | ||
| IL_9G7C_004 | 1/A/27:30, 1/A/42:47 | No text annotation | ||
| IL_9G7C_034 | 1/A/112:114, 1/A/131:133 | Isolated non-canonical cWW pair | geometric IL_7LYF_002 IL_87720.3 | |
| IL_9G7C_006 | 1/A/144:156, 1/A/166:178 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9G7C_031 | No text annotation | ||
| IL_9G7C_001 | No text annotation | ||
| IL_9G7C_002 | Tandem non-canonical cWW pairs | ||
| IL_9G7C_003 | No text annotation | ||
| IL_9G7C_005 | No text annotation | ||
| IL_9G7C_007 | No text annotation | ||
| IL_9G7C_008 | Isolated non-canonical cWW pair | ||
| IL_9G7C_035 | Major groove intercalation | ||
| IL_9G7C_036 | No text annotation | ||
| IL_9G7C_009 | No text annotation | ||
| IL_9G7C_010 | No text annotation | ||
| IL_9G7C_037 | Isolated non-canonical cWW pair | ||
| IL_9G7C_011 | No text annotation | ||
| IL_9G7C_012 | No text annotation | ||
| IL_9G7C_013 | No text annotation | ||
| IL_9G7C_038 | Major groove intercalation | ||
| IL_9G7C_039 | No text annotation | ||
| IL_9G7C_014 | No text annotation | ||
| IL_9G7C_015 | No text annotation | ||
| IL_9G7C_040 | Isolated non-canonical cWW pair | ||
| IL_9G7C_016 | No text annotation | ||
| IL_9G7C_017 | No text annotation | ||
| IL_9G7C_018 | Major groove intercalation | ||
| IL_9G7C_041 | No text annotation | ||
| IL_9G7C_019 | No text annotation | ||
| IL_9G7C_020 | No text annotation | ||
| IL_9G7C_021 | Single stack bend | ||
| IL_9G7C_042 | Isolated non-canonical cWW pair | ||
| IL_9G7C_022 | No text annotation | ||
| IL_9G7C_043 | No text annotation | ||
| IL_9G7C_023 | No text annotation | ||
| IL_9G7C_024 | Major groove intercalation | ||
| IL_9G7C_044 | No text annotation | ||
| IL_9G7C_025 | No text annotation | ||
| IL_9G7C_026 | No text annotation | ||
| IL_9G7C_027 | Single stack bend | ||
| IL_9G7C_045 | No text annotation | ||
| IL_9G7C_028 | No text annotation | ||
| IL_9G7C_029 | Isolated non-canonical cWW pair | ||
| IL_9G7C_030 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9G7C_016 | 1/A/18:24, 1/A/50:51, 1/A/197:206 | No text annotation | ||
| J3_9G7C_017 | 1/A/54:65, 1/A/69:103, 1/A/188:194 | No text annotation | ||
| J3_9G7C_003 | 1/A/106:108, 1/A/137:141, 1/A/181:185 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9G7C_001 | No text annotation | ||
| J3_9G7C_002 | No text annotation | ||
| J3_9G7C_018 | No text annotation | ||
| J3_9G7C_004 | No text annotation | ||
| J3_9G7C_019 | No text annotation | ||
| J3_9G7C_005 | No text annotation | ||
| J3_9G7C_006 | No text annotation | ||
| J3_9G7C_020 | No text annotation | ||
| J3_9G7C_007 | No text annotation | ||
| J3_9G7C_021 | No text annotation | ||
| J3_9G7C_008 | No text annotation | ||
| J3_9G7C_009 | No text annotation | ||
| J3_9G7C_022 | No text annotation | ||
| J3_9G7C_010 | No text annotation | ||
| J3_9G7C_023 | No text annotation | ||
| J3_9G7C_011 | No text annotation | ||
| J3_9G7C_012 | No text annotation | ||
| J3_9G7C_024 | No text annotation | ||
| J3_9G7C_013 | No text annotation | ||
| J3_9G7C_025 | No text annotation | ||
| J3_9G7C_014 | No text annotation | ||
| J3_9G7C_015 | No text annotation |
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