HL_9G8M_005

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9G8M|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.3314

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

9G8M|1|L5|U|204
9G8M|1|L5|C|205
9G8M|1|L5|U|206
9G8M|1|L5|G|207
9G8M|1|L5|A|208
9G8M|1|L5|U|209
9G8M|1|L5|C|210
9G8M|1|L5|G|211

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LY

60S ribosomal protein L26