9G8M Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_9G8M_001 | 1/L5/37:44 | No text annotation | homologous HL_8C3A_001 NA | |
HL_9G8M_002 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
HL_9G8M_003 | 1/L5/89:95 | No text annotation | homologous HL_8P9A_115 HL_76371.2 | |
HL_9G8M_005 | 1/L5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
HL_9G8M_006 | 1/L5/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
HL_9G8M_007 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
HL_9G8M_008 | 1/L5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
HL_9G8M_009 | 1/L5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
HL_9G8M_010 | 1/L5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
HL_9G8M_011 | 1/L5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
HL_9G8M_012 | 1/L5/1175:1186 | No text annotation | ||
HL_9G8M_014 | 1/L5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
HL_9G8M_015 | 1/L5/1364:1373 | No text annotation | ||
HL_9G8M_016 | 1/L5/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
HL_9G8M_018 | 1/L5/1435:1449 | No text annotation | ||
HL_9G8M_019 | 1/L5/1479:1486 | No text annotation | ||
HL_9G8M_020 | 1/L5/1561:1566 | GNRA | homologous HL_8C3A_019 NA | |
HL_9G8M_021 | 1/L5/1593:1602 | No text annotation | homologous HL_8P9A_132 HL_50204.1 | |
HL_9G8M_022 | 1/L5/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
HL_9G8M_023 | 1/L5/1675:1680 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
HL_9G8M_024 | 1/L5/1753:1777 | No text annotation | ||
HL_9G8M_025 | 1/L5/1814:1823 | No text annotation | ||
HL_9G8M_026 | 1/L5/1862:1868 | GNRA | homologous HL_8C3A_025 NA | |
HL_9G8M_027 | 1/L5/1884:1891 | No text annotation | homologous HL_8P9A_138 HL_47171.1 | |
HL_9G8M_029 | 1/L5/2315:2320 | GNRA | homologous HL_8C3A_030 NA | |
HL_9G8M_030 | 1/L5/2374:2382 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
HL_9G8M_031 | 1/L5/2418:2424 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
HL_9G8M_032 | 1/L5/2456:2461 | GNRA variation | homologous HL_8C3A_033 NA | |
HL_9G8M_034 | 1/L5/2521:2530 | No text annotation | homologous HL_8P9A_146 HL_77449.1 | |
HL_9G8M_036 | 1/L5/2576:2581 | GNRA | homologous HL_8C3A_036 NA | |
HL_9G8M_037 | 1/L5/2622:2630 | Pseudoknot geometry | homologous HL_8P9A_148 HL_22758.1 | |
HL_9G8M_038 | 1/L5/2662:2668 | No text annotation | homologous HL_8C3A_038 NA | |
HL_9G8M_039 | 1/L5/2702:2710 | No text annotation | geometric HL_5ID6_001 HL_69752.4 | |
HL_9G8M_040 | 1/L5/2736:2740 | No text annotation | homologous HL_8C3A_040 NA | |
HL_9G8M_041 | 1/L5/2790:2797 | No text annotation | homologous HL_8P9A_152 HL_28592.1 | |
HL_9G8M_042 | 1/L5/2808:2814 | GNRA | homologous HL_8P9A_153 HL_34789.2 | |
HL_9G8M_043 | 1/L5/2870:2875 | UNCG | homologous HL_8P9A_154 HL_61337.2 | |
HL_9G8M_044 | 1/L5/3612:3616 | No text annotation | homologous HL_8C3A_045 NA | |
HL_9G8M_045 | 1/L5/3637:3647 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
HL_9G8M_046 | 1/L5/3666:3672 | GNRA | homologous HL_8C3A_047 NA | |
HL_9G8M_047 | 1/L5/3722:3727 | GNRA | homologous HL_8P9A_159 HL_34789.2 | |
HL_9G8M_048 | 1/L5/3794:3802 | No text annotation | homologous HL_8C3A_050 NA | |
HL_9G8M_049 | 1/L5/3871:3880 | No text annotation | homologous HL_8P9A_162 HL_78372.1 | |
HL_9G8M_051 | 1/L5/4191:4199 | No text annotation | homologous HL_8P9A_165 HL_11974.2 | |
HL_9G8M_052 | 1/L5/4208:4220 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
HL_9G8M_053 | 1/L5/4248:4256 | No text annotation | homologous HL_8C3A_057 NA | |
HL_9G8M_113 | 1/L5/4268:4275 | Pseudoknot geometry | homologous HL_8CRE_056 NA | |
HL_9G8M_055 | 1/L5/4299:4307 | No text annotation | homologous HL_8C3A_059 NA | |
HL_9G8M_056 | 1/L5/4319:4324 | GNRA | homologous HL_8C3A_060 NA | |
HL_9G8M_057 | 1/L5/4350:4360 | No text annotation | geometric HL_2ZZM_002 HL_33487.1 | |
HL_9G8M_058 | 1/L5/4415:4423 | No text annotation | homologous HL_8P9A_172 HL_52011.1 | |
HL_9G8M_059 | 1/L5/4472:4479 | GNRA variation | homologous HL_8P9A_173 HL_46665.2 | |
HL_9G8M_060 | 1/L5/4493:4503 | No text annotation | ||
HL_9G8M_061 | 1/L5/4538:4543 | GNRA | homologous HL_8P9A_175 HL_34789.2 | |
HL_9G8M_062 | 1/L5/4601:4606 | GNRA | homologous HL_8C3A_066 NA | |
HL_9G8M_063 | 1/L5/4644:4649 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
HL_9G8M_064 | 1/L5/4686:4700 | No text annotation | homologous HL_8C3A_068 NA | |
HL_9G8M_065 | 1/L5/4905:4912 | No text annotation | geometric HL_5XUZ_001 HL_69752.4 | |
HL_9G8M_066 | 1/L5/4973:4981 | No text annotation | homologous HL_8P9A_181 HL_37889.1 | |
HL_9G8M_068 | 1/L7/32:45 | No text annotation | geometric HL_5TBW_238 NA | |
HL_9G8M_069 | 1/L7/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
HL_9G8M_070 | 1/L7/86:91 | GNRA | homologous HL_8C3A_074 NA | |
HL_9G8M_071 | 1/L8/47:56 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
HL_9G8M_072 | 1/L8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
HL_9G8M_073 | 1/L8/107:112 | No text annotation | homologous HL_8C3A_076 NA | |
HL_9G8M_074 | 1/L8/121:129 | No text annotation | geometric HL_4V9F_003 HL_75660.7 | |
HL_9G8M_075 | 1/S2/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
HL_9G8M_077 | 1/S2/151:167 | No text annotation | ||
HL_9G8M_079 | 1/S2/288:295 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
HL_9G8M_081 | 1/S2/377:387 | No text annotation | geometric HL_1KH6_003 HL_33487.1 | |
HL_9G8M_082 | 1/S2/416:421 | No text annotation | homologous HL_8P9A_198 HL_93535.2 | |
HL_9G8M_083 | 1/S2/441:452 | No text annotation | homologous HL_8P9A_199 HL_86432.1 | |
HL_9G8M_084 | 1/S2/462:467 | UNCG | homologous HL_8P9A_200 HL_61337.2 | |
HL_9G8M_085 | 1/S2/498:504 | No text annotation | homologous HL_8C3A_203 NA | |
HL_9G8M_087 | 1/S2/569:581 | No text annotation | homologous HL_8P9A_203 HL_68749.1 | |
HL_9G8M_088 | 1/S2/618:623 | GNRA variation | homologous HL_8C3A_206 NA | |
HL_9G8M_089 | 1/S2/820:828 | No text annotation | homologous HL_8C3A_208 NA | |
HL_9G8M_090 | 1/S2/832:842 | No text annotation | geometric HL_7KI3_001 HL_75660.7 | |
HL_9G8M_091 | 1/S2/879:907 | No text annotation | ||
HL_9G8M_092 | 1/S2/957:966 | No text annotation | homologous HL_8P9A_209 HL_38491.2 | |
HL_9G8M_093 | 1/S2/994:999 | GNRA | homologous HL_8C3A_212 NA | |
HL_9G8M_094 | 1/S2/1054:1064 | No text annotation | homologous HL_8P9A_211 HL_38491.2 | |
HL_9G8M_095 | 1/S2/1112:1121 | No text annotation | ||
HL_9G8M_096 | 1/S2/1141:1146 | GNRA | homologous HL_8C3A_215 NA | |
HL_9G8M_097 | 1/S2/1178:1183 | GNRA | homologous HL_8P9A_214 HL_34789.2 | |
HL_9G8M_100 | 1/S2/1353:1358 | GNRA | homologous HL_8P9A_217 HL_34789.2 | |
HL_9G8M_101 | 1/S2/1366:1373 | T-loop related | homologous HL_8C3A_220 NA | |
HL_9G8M_106 | 1/S2/1658:1666 | No text annotation | homologous HL_8C3A_225 NA | |
HL_9G8M_108 | 1/S2/1847:1852 | GNRA variation | homologous HL_8C3A_227 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_9G8M_004 | No text annotation | ||
HL_9G8M_013 | No text annotation | ||
HL_9G8M_017 | No text annotation | ||
HL_9G8M_112 | No text annotation | ||
HL_9G8M_028 | No text annotation | ||
HL_9G8M_033 | No text annotation | ||
HL_9G8M_035 | GNRA | ||
HL_9G8M_050 | No text annotation | ||
HL_9G8M_054 | No text annotation | ||
HL_9G8M_067 | No text annotation | ||
HL_9G8M_076 | No text annotation | ||
HL_9G8M_078 | No text annotation | ||
HL_9G8M_080 | No text annotation | ||
HL_9G8M_086 | No text annotation | ||
HL_9G8M_098 | No text annotation | ||
HL_9G8M_099 | No text annotation | ||
HL_9G8M_102 | No text annotation | ||
HL_9G8M_114 | No text annotation | ||
HL_9G8M_103 | No text annotation | ||
HL_9G8M_104 | GNRA | ||
HL_9G8M_105 | No text annotation | ||
HL_9G8M_115 | No text annotation | ||
HL_9G8M_107 | No text annotation | ||
HL_9G8M_109 | No text annotation | ||
HL_9G8M_110 | No text annotation | ||
HL_9G8M_111 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_9G8M_001 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
IL_9G8M_002 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8P9A_232 IL_97561.2 | |
IL_9G8M_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Z7F_006 IL_01003.2 | |
IL_9G8M_004 | 1/L5/26:27, 1/L5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
IL_9G8M_005 | 1/L5/30:37, 1/L5/44:52 | No text annotation | homologous IL_8C3A_005 NA | |
IL_9G8M_006 | 1/L5/81:88, 1/L5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_53348.1 | |
IL_9G8M_007 | 1/L5/118:121, 1/L5/152:153 | Multiple bulged bases | geometric IL_1R3E_001 IL_05670.1 | |
IL_9G8M_008 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
IL_9G8M_009 | 1/L5/121:122, 1/L5/147:152 | No text annotation | homologous IL_8P9A_236 IL_10396.1 | |
IL_9G8M_010 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
IL_9G8M_011 | 1/L5/168:175, 1/L5/261:267 | No text annotation | ||
IL_9G8M_013 | 1/L5/182:189, 1/L5/252:255 | No text annotation | ||
IL_9G8M_014 | 1/L5/195:196, 1/L5/244:246 | No text annotation | ||
IL_9G8M_015 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
IL_9G8M_016 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform, major groove intercalation | geometric IL_1U9S_005 IL_55206.1 | |
IL_9G8M_017 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
IL_9G8M_018 | 1/L5/387:390, 1/L5/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
IL_9G8M_019 | 1/L5/415:421, 1/L8/13:19 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
IL_9G8M_020 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | geometric IL_7MLW_007 IL_49140.1 | |
IL_9G8M_240 | 1/L5/459:460, 1/L5/695:697 | Major groove platform | geometric IL_7EOG_001 IL_48076.8 | |
IL_9G8M_022 | 1/L5/462:472, 1/L5/682:693 | No text annotation | ||
IL_9G8M_023 | 1/L5/482:486, 1/L5/670:672 | Isolated non-canonical cWW contact | geometric IL_5UNE_009 IL_87720.1 | |
IL_9G8M_024 | 1/L5/488:491, 1/L5/662:668 | No text annotation | ||
IL_9G8M_025 | 1/L5/491:493, 1/L5/661:662 | No text annotation | ||
IL_9G8M_027 | 1/L5/499:504, 1/L5/654:656 | No text annotation | ||
IL_9G8M_028 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | geometric IL_8UIW_001 IL_14190.2 | |
IL_9G8M_029 | 1/L5/511:516, 1/L5/646:648 | No text annotation | ||
IL_9G8M_030 | 1/L5/708:709, 1/L5/1287:1289 | No text annotation | ||
IL_9G8M_031 | 1/L5/722:724, 1/L5/942:946 | No text annotation | ||
IL_9G8M_032 | 1/L5/726:731, 1/L5/938:940 | No text annotation | ||
IL_9G8M_033 | 1/L5/731:735, 1/L5/928:938 | No text annotation | ||
IL_9G8M_034 | 1/L5/735:737, 1/L5/927:928 | No text annotation | ||
IL_9G8M_035 | 1/L5/740:742, 1/L5/922:924 | Isolated non-canonical cWW pair | geometric IL_5CCB_001 IL_01003.2 | |
IL_9G8M_036 | 1/L5/744:752, 1/L5/911:920 | No text annotation | ||
IL_9G8M_038 | 1/L5/1074:1076, 1/L5/1234:1236 | Isolated non-canonical cWW pair | geometric IL_4AOB_005 IL_01003.2 | |
IL_9G8M_039 | 1/L5/1082:1085, 1/L5/1212:1218 | No text annotation | ||
IL_9G8M_040 | 1/L5/1086:1087, 1/L5/1209:1211 | Single bulged C | geometric IL_1DQF_001 NA | |
IL_9G8M_041 | 1/L5/1093:1097, 1/L5/1200:1203 | No text annotation | ||
IL_9G8M_042 | 1/L5/1097:1098, 1/L5/1197:1200 | No text annotation | ||
IL_9G8M_043 | 1/L5/1171:1175, 1/L5/1186:1190 | No text annotation | ||
IL_9G8M_045 | 1/L5/1357:1360, 1/L5/1378:1382 | No text annotation | ||
IL_9G8M_046 | 1/L5/1360:1361, 1/L5/1376:1378 | No text annotation | ||
IL_9G8M_047 | 1/L5/1425:1429, 1/L5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
IL_9G8M_048 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared | geometric IL_4LFB_060 IL_58355.2 | |
IL_9G8M_049 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_8P9A_252 IL_14190.2 | |
IL_9G8M_050 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend | geometric IL_5TBW_009 NA | |
IL_9G8M_051 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
IL_9G8M_052 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | homologous IL_8C3A_030 NA | |
IL_9G8M_053 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
IL_9G8M_054 | 1/L5/1551:1555, 1/L5/1572:1576 | Triple sheared | homologous IL_8C3A_033 NA | |
IL_9G8M_055 | 1/L5/1586:1589, 1/L5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
IL_9G8M_056 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
IL_9G8M_057 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
IL_9G8M_058 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
IL_9G8M_059 | 1/L5/1686:1688, 1/L5/1846:1849 | No text annotation | ||
IL_9G8M_060 | 1/L5/1732:1737, 1/L5/1792:1797 | No text annotation | ||
IL_9G8M_061 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform | homologous IL_8P9A_267 IL_34520.2 | |
IL_9G8M_062 | 1/L5/1739:1744, 1/L5/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
IL_9G8M_241 | 1/L5/1746:1749, 1/L5/1781:1784 | Tandem non-canonical cWW pairs | homologous IL_8CRE_044 NA | |
IL_9G8M_064 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_01003.2 | |
IL_9G8M_065 | 1/L5/1856:1858, 1/L5/1872:1874 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.2 | |
IL_9G8M_067 | 1/L5/1903:1907, 1/L5/2065:2069 | UAA/GAN | homologous IL_8P9A_276 IL_08938.1 | |
IL_9G8M_068 | 1/L5/1909:1916, 1/L5/2062:2063 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
IL_9G8M_069 | 1/L5/1916:1918, 1/L5/2061:2062 | No text annotation | ||
IL_9G8M_070 | 1/L5/1918:1920, 1/L5/2060:2061 | No text annotation | ||
IL_9G8M_071 | 1/L5/1924:1931, 1/L5/2051:2056 | No text annotation | homologous IL_8C3A_054 NA | |
IL_9G8M_072 | 1/L5/1931:1942, 1/L5/2036:2051 | No text annotation | homologous IL_8P9A_280 IL_34501.1 | |
IL_9G8M_073 | 1/L5/1944:1946, 1/L5/2033:2034 | Single bulged U | homologous IL_8P9A_281 IL_97561.2 | |
IL_9G8M_242 | 1/L5/1954:1963, 1/L5/2020:2025 | No text annotation | ||
IL_9G8M_076 | 1/L5/2081:2083, 1/L5/2270:2271 | No text annotation | ||
IL_9G8M_077 | 1/L5/2288:2290, 1/L5/2340:2343 | No text annotation | homologous IL_8P9A_285 IL_42997.5 | |
IL_9G8M_078 | 1/L5/2297:2299, 1/L5/2332:2333 | Single bulged A | homologous IL_8C3A_062 NA | |
IL_9G8M_079 | 1/L5/2300:2307, 1/L5/2327:2331 | Kink-turn | homologous IL_8P9A_287 IL_90775.2 | |
IL_9G8M_080 | 1/L5/2310:2312, 1/L5/2323:2324 | Single bulged A | homologous IL_8P9A_288 IL_14190.2 | |
IL_9G8M_081 | 1/L5/2356:2362, 1/L5/3856:3861 | No text annotation | homologous IL_8C3A_065 NA | |
IL_9G8M_082 | 1/L5/2413:2417, 1/L5/2425:2427 | C-loop | homologous IL_8C3A_482 NA | |
IL_9G8M_083 | 1/L5/2444:2448, 1/L5/2507:2512 | UAA/GAN | homologous IL_8C3A_067 NA | |
IL_9G8M_084 | 1/L5/2540:2545, 1/L5/2770:2772 | Isolated non-canonical cWW pair | geometric IL_4RUM_001 IL_76400.1 | |
IL_9G8M_085 | 1/L5/2587:2591, 1/L5/2750:2754 | Triple sheared | homologous IL_8P9A_295 IL_15190.2 | |
IL_9G8M_086 | 1/L5/2611:2612, 1/L5/2722:2724 | Single bulged C | homologous IL_8C3A_075 NA | |
IL_9G8M_087 | 1/L5/2612:2613, 1/L5/2720:2722 | Single stack bend | homologous IL_8P9A_298 IL_15011.2 | |
IL_9G8M_088 | 1/L5/2644:2646, 1/L5/2683:2686 | Decoding loop related | geometric IL_2O3X_003 IL_53541.1 | |
IL_9G8M_089 | 1/L5/2649:2651, 1/L5/2679:2680 | Single bulged G | geometric IL_7D7W_002 IL_28408.2 | |
IL_9G8M_090 | 1/L5/2654:2660, 1/L5/2670:2676 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
IL_9G8M_091 | 1/L5/2830:2836, 1/L5/3848:3851 | No text annotation | homologous IL_8C3A_080 NA | |
IL_9G8M_092 | 1/L5/2842:2844, 1/L5/3840:3842 | No text annotation | homologous IL_8C3A_081 NA | |
IL_9G8M_093 | 1/L5/2845:2848, 1/L5/3838:3839 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
IL_9G8M_094 | 1/L5/2845:2853, 1/L5/3835:3839 | No text annotation | geometric IL_8C3A_484 NA | |
IL_9G8M_095 | 1/L5/2848:2853, 1/L5/3835:3838 | No text annotation | homologous IL_8P9A_306 IL_28217.1 | |
IL_9G8M_096 | 1/L5/2865:2870, 1/L5/2875:2881 | No text annotation | homologous IL_8C3A_084 NA | |
IL_9G8M_097 | 1/L5/2887:2889, 1/L5/3608:3610 | Isolated non-canonical cWW pair | homologous IL_8P9A_308 IL_01003.2 | |
IL_9G8M_098 | 1/L5/2894:2895, 1/L5/3600:3603 | No text annotation | homologous IL_8C3A_086 NA | |
IL_9G8M_099 | 1/L5/3630:3631, 1/L5/3825:3827 | Single bulged A | homologous IL_8P9A_310 IL_14190.2 | |
IL_9G8M_100 | 1/L5/3658:3663, 1/L5/3675:3682 | No text annotation | homologous IL_8P9A_311 IL_14684.1 | |
IL_9G8M_101 | 1/L5/3698:3701, 1/L5/3747:3748 | No text annotation | homologous IL_8C3A_089 NA | |
IL_9G8M_102 | 1/L5/3702:3703, 1/L5/3743:3746 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
IL_9G8M_103 | 1/L5/3706:3712, 1/L5/3737:3740 | No text annotation | ||
IL_9G8M_104 | 1/L5/3712:3719, 1/L5/3730:3737 | No text annotation | ||
IL_9G8M_105 | 1/L5/3778:3779, 1/L5/3809:3812 | No text annotation | homologous IL_8C3A_094 NA | |
IL_9G8M_106 | 1/L5/3779:3790, 1/L5/3806:3809 | No text annotation | homologous IL_8P9A_318 IL_84014.1 | |
IL_9G8M_107 | 1/L5/3893:3896, 1/L5/4561:4563 | No text annotation | homologous IL_8C3A_096 NA | |
IL_9G8M_108 | 1/L5/3898:3900, 1/L5/4556:4559 | No text annotation | homologous IL_8C3A_097 NA | |
IL_9G8M_109 | 1/L5/3911:3913, 1/L5/4386:4387 | Single bulged U | homologous IL_8C3A_098 NA | |
IL_9G8M_110 | 1/L5/3914:3915, 1/L5/4382:4385 | Minor groove platform | homologous IL_8C3A_099 NA | |
IL_9G8M_111 | 1/L5/3925:3927, 1/L5/4179:4182 | No text annotation | homologous IL_8C3A_100 NA | |
IL_9G8M_112 | 1/L5/4080:4086, 1/L5/4159:4162 | No text annotation | homologous IL_8P9A_324 IL_52092.1 | |
IL_9G8M_113 | 1/L5/4089:4127, 1/L5/4153:4156 | No text annotation | ||
IL_9G8M_115 | 1/L5/4189:4190, 1/L5/4200:4202 | Single bulged A | homologous IL_8C3A_107 NA | |
IL_9G8M_116 | 1/L5/4241:4243, 1/L5/4261:4265 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
IL_9G8M_117 | 1/L5/4289:4291, 1/L5/4315:4316 | Single bulged A | geometric IL_7MKY_001 IL_14190.2 | |
IL_9G8M_118 | 1/L5/4293:4296, 1/L5/4310:4313 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.2 | |
IL_9G8M_119 | 1/L5/4345:4348, 1/L5/4362:4363 | Single stack bend | geometric IL_5TBW_101 NA | |
IL_9G8M_120 | 1/L5/4398:4401, 1/L5/4438:4442 | No text annotation | homologous IL_8C3A_111 NA | |
IL_9G8M_121 | 1/L5/4401:4403, 1/L5/4437:4438 | Major groove platform | homologous IL_8C3A_112 NA | |
IL_9G8M_122 | 1/L5/4403:4405, 1/L5/4433:4437 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
IL_9G8M_123 | 1/L5/4410:4414, 1/L5/4424:4428 | Double sheared with non-canonical cWW | homologous IL_8P9A_333 IL_87767.2 | |
IL_9G8M_124 | 1/L5/4451:4452, 1/L5/4524:4526 | No text annotation | homologous IL_8P9A_334 IL_46637.2 | |
IL_9G8M_125 | 1/L5/4454:4456, 1/L5/4518:4522 | No text annotation | homologous IL_8C3A_116 NA | |
IL_9G8M_126 | 1/L5/4456:4457, 1/L5/4515:4518 | No text annotation | homologous IL_8C3A_117 NA | |
IL_9G8M_127 | 1/L5/4464:4466, 1/L5/4487:4489 | Isolated non-canonical cWW pair | geometric IL_4YHW_002 IL_01003.2 | |
IL_9G8M_128 | 1/L5/4464:4468, 1/L5/4483:4489 | No text annotation | ||
IL_9G8M_129 | 1/L5/4466:4468, 1/L5/4483:4487 | No text annotation | ||
IL_9G8M_130 | 1/L5/4535:4536, 1/L5/4545:4547 | Single bulged A | homologous IL_8P9A_341 IL_14190.2 | |
IL_9G8M_131 | 1/L5/4578:4580, 1/L5/4719:4721 | Isolated cWH basepair | geometric IL_4E5C_001 IL_10892.2 | |
IL_9G8M_132 | 1/L5/4580:4583, 1/L5/4715:4719 | Double sheared | homologous IL_8P9A_342 IL_58355.2 | |
IL_9G8M_133 | 1/L5/4588:4590, 1/L5/4616:4618 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.2 | |
IL_9G8M_134 | 1/L5/4594:4601, 1/L5/4606:4612 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
IL_9G8M_135 | 1/L5/4622:4627, 1/L5/4667:4671 | No text annotation | ||
IL_9G8M_136 | 1/L5/4630:4635, 1/L5/4660:4664 | No text annotation | homologous IL_8P9A_346 IL_98200.1 | |
IL_9G8M_137 | 1/L5/4636:4638, 1/L5/4657:4659 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10892.2 | |
IL_9G8M_138 | 1/L5/4639:4640, 1/L5/4653:4656 | No text annotation | homologous IL_8C3A_128 NA | |
IL_9G8M_139 | 1/L5/4678:4683, 1/L5/4703:4708 | UAA/GAN with extra cWW | geometric IL_5J7L_350 NA | |
IL_9G8M_243 | 1/L5/4738:4741, 1/L5/4956:4957 | No text annotation | geometric IL_8P9A_309 IL_18824.1 | |
IL_9G8M_141 | 1/L5/4741:4744, 1/L5/4952:4956 | No text annotation | ||
IL_9G8M_142 | 1/L5/4753:4763, 1/L5/4867:4876 | No text annotation | ||
IL_9G8M_143 | 1/L5/4882:4887, 1/L5/4928:4933 | No text annotation | geometric IL_5TBW_476 NA | |
IL_9G8M_144 | 1/L5/4889:4894, 1/L5/4922:4926 | No text annotation | ||
IL_9G8M_146 | 1/L5/4970:4973, 1/L5/4981:4984 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
IL_9G8M_147 | 1/L5/4990:4992, 1/L5/5055:5057 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.2 | |
IL_9G8M_148 | 1/L5/4994:4995, 1/L5/5051:5053 | Single bulged C | geometric IL_1KUQ_002 IL_05642.2 | |
IL_9G8M_149 | 1/L5/4998:5000, 1/L5/5043:5048 | No text annotation | homologous IL_8C3A_138 NA | |
IL_9G8M_150 | 1/L5/5001:5007, 1/L5/5037:5042 | No text annotation | ||
IL_9G8M_151 | 1/L5/5010:5012, 1/L5/5033:5034 | Single bulged U | homologous IL_8C3A_140 NA | |
IL_9G8M_152 | 1/L5/5012:5015, 1/L5/5030:5033 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
IL_9G8M_153 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_8C3A_143 NA | |
IL_9G8M_154 | 1/L7/21:27, 1/L7/52:57 | Minor groove platform related | homologous IL_8C3A_144 NA | |
IL_9G8M_155 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
IL_9G8M_156 | 1/L7/32:36, 1/L7/41:45 | No text annotation | homologous IL_9DFE_113 IL_58103.12 | |
IL_9G8M_157 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_148 NA | |
IL_9G8M_158 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.2 | |
IL_9G8M_159 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
IL_9G8M_160 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_76400.1 | |
IL_9G8M_161 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_8C3A_023 NA | |
IL_9G8M_162 | 1/S2/26:28, 1/S2/646:648 | Isolated cWH basepair | geometric IL_8C3A_413 NA | |
IL_9G8M_163 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
IL_9G8M_164 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.2 | |
IL_9G8M_165 | 1/S2/41:47, 1/S2/479:481 | No text annotation | geometric IL_8C3A_395 NA | |
IL_9G8M_166 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | homologous IL_8P9A_377 IL_34520.2 | |
IL_9G8M_167 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_8C3A_397 NA | |
IL_9G8M_168 | 1/S2/63:69, 1/S2/80:85 | No text annotation | geometric IL_3BBM_001 IL_47352.2 | |
IL_9G8M_169 | 1/S2/108:110, 1/S2/351:353 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_71625.2 | |
IL_9G8M_170 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_87720.1 | |
IL_9G8M_171 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
IL_9G8M_172 | 1/S2/116:121, 1/S2/343:347 | No text annotation | homologous IL_8C3A_401 NA | |
IL_9G8M_173 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_8P9A_383 IL_24485.1 | |
IL_9G8M_174 | 1/S2/188:192, 1/S2/207:211 | No text annotation | ||
IL_9G8M_175 | 1/S2/317:321, 1/S2/330:333 | No text annotation | ||
IL_9G8M_176 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
IL_9G8M_177 | 1/S2/366:371, 1/S2/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
IL_9G8M_178 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_8P9A_393 IL_93336.1 | |
IL_9G8M_179 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
IL_9G8M_180 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | homologous IL_8P9A_396 IL_97561.2 | |
IL_9G8M_181 | 1/S2/491:495, 1/S2/508:509 | C-loop | homologous IL_8C3A_416 NA | |
IL_9G8M_182 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | homologous IL_8P9A_398 IL_28408.2 | |
IL_9G8M_245 | 1/S2/528:530, 1/S2/554:557 | No text annotation | ||
IL_9G8M_184 | 1/S2/599:608, 1/S2/635:637 | No text annotation | ||
IL_9G8M_185 | 1/S2/611:617, 1/S2/624:632 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
IL_9G8M_186 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.2 | |
IL_9G8M_187 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_8C3A_426 NA | |
IL_9G8M_188 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
IL_9G8M_189 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
IL_9G8M_246 | 1/S2/802:803, 1/S2/860:863 | No text annotation | homologous IL_8CRE_428 IL_73108.2 | |
IL_9G8M_191 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | homologous IL_8P9A_413 IL_71625.2 | |
IL_9G8M_247 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_8CRE_430 IL_59049.2 | |
IL_9G8M_193 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_8P9A_417 IL_74641.2 | |
IL_9G8M_194 | 1/S2/925:926, 1/S2/1015:1017 | Single bulged U | geometric IL_7KVT_002 IL_97561.2 | |
IL_9G8M_195 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8P9A_419 IL_15225.2 | |
IL_9G8M_196 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
IL_9G8M_197 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_8C3A_439 NA | |
IL_9G8M_198 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | geometric IL_4V88_434 NA | |
IL_9G8M_199 | 1/S2/1042:1047, 1/S2/1071:1073 | No text annotation | homologous IL_8C3A_441 NA | |
IL_9G8M_200 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
IL_9G8M_248 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
IL_9G8M_202 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
IL_9G8M_203 | 1/S2/1101:1103, 1/S2/1129:1131 | Stack and bulge | geometric IL_2O3X_001 IL_53541.1 | |
IL_9G8M_204 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
IL_9G8M_205 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8C3A_446 NA | |
IL_9G8M_206 | 1/S2/1203:1205, 1/S2/1693:1696 | No text annotation | geometric IL_7Z4D_016 NA | |
IL_9G8M_207 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_8C3A_448 NA | |
IL_9G8M_208 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_8P9A_431 IL_63596.12 | |
IL_9G8M_215 | 1/S2/1337:1338, 1/S2/1488:1491 | Single stack bend | geometric IL_8C3A_091 NA | |
IL_9G8M_216 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated non-canonical cWW pair | homologous IL_8C3A_459 NA | |
IL_9G8M_217 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_8P9A_443 IL_34520.2 | |
IL_9G8M_222 | 1/S2/1541:1558, 1/S2/1577:1592 | No text annotation | ||
IL_9G8M_224 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
IL_9G8M_225 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_8P9A_452 IL_18228.1 | |
IL_9G8M_226 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_8C3A_471 NA | |
IL_9G8M_227 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
IL_9G8M_228 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | ||
IL_9G8M_229 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
IL_9G8M_230 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_8C3A_475 NA | |
IL_9G8M_231 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U | homologous IL_8P9A_458 IL_97561.2 | |
IL_9G8M_232 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
IL_9G8M_233 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_8C3A_478 NA | |
IL_9G8M_234 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
IL_9G8M_235 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared | homologous IL_8C3A_480 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_9G8M_012 | Single stack bend | ||
IL_9G8M_021 | Isolated cWS basepair | ||
IL_9G8M_026 | Isolated non-canonical cWW pair | ||
IL_9G8M_037 | Single stack bend | ||
IL_9G8M_044 | No text annotation | ||
IL_9G8M_063 | No text annotation | ||
IL_9G8M_066 | No text annotation | ||
IL_9G8M_074 | No text annotation | ||
IL_9G8M_075 | Single stack bend | ||
IL_9G8M_114 | Single stack bend | ||
IL_9G8M_140 | No text annotation | ||
IL_9G8M_145 | Isolated non-canonical cWW pair | ||
IL_9G8M_244 | Single bulged C | ||
IL_9G8M_183 | No text annotation | ||
IL_9G8M_190 | Major groove minor groove platform with extra cWW | ||
IL_9G8M_192 | No text annotation | ||
IL_9G8M_201 | No text annotation | ||
IL_9G8M_209 | Isolated non-canonical cWW pair | ||
IL_9G8M_210 | Minor groove platform | ||
IL_9G8M_211 | No text annotation | ||
IL_9G8M_212 | No text annotation | ||
IL_9G8M_213 | Single bulged U | ||
IL_9G8M_214 | No text annotation | ||
IL_9G8M_218 | No text annotation | ||
IL_9G8M_219 | No text annotation | ||
IL_9G8M_220 | No text annotation | ||
IL_9G8M_221 | Isolated non-canonical cWW pair | ||
IL_9G8M_223 | Isolated non-canonical cWW pair | ||
IL_9G8M_236 | No text annotation | ||
IL_9G8M_249 | No text annotation | ||
IL_9G8M_250 | No text annotation | ||
IL_9G8M_237 | No text annotation | ||
IL_9G8M_238 | No text annotation | ||
IL_9G8M_251 | No text annotation | ||
IL_9G8M_239 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_9G8M_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
J3_9G8M_002 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
J3_9G8M_003 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | geometric J3_4WF9_010 J3_68715.1 | |
J3_9G8M_004 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8P9A_047 J3_17917.1 | |
J3_9G8M_005 | 1/L5/448:458, 1/L5/698:704, 1/L5/1293:1298 | No text annotation | ||
J3_9G8M_006 | 1/L5/711:713, 1/L5/955:976, 1/L5/1278:1285 | No text annotation | ||
J3_9G8M_040 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_8CRE_009 NA | |
J3_9G8M_008 | 1/L5/1545:1548, 1/L5/1580:1584, 1/L5/1609:1614 | No text annotation | homologous J3_8P9A_050 J3_21998.1 | |
J3_9G8M_009 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1831:1835 | No text annotation | ||
J3_9G8M_010 | 1/L5/2391:2397, 1/L5/2803:2805, 1/L5/2817:2820 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
J3_9G8M_011 | 1/L5/2400:2403, 1/L5/2783:2789, 1/L5/2798:2800 | No text annotation | homologous J3_8P9A_054 J3_76012.1 | |
J3_9G8M_012 | 1/L5/2438:2443, 1/L5/2513:2517, 1/L5/2534:2535 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
J3_9G8M_013 | 1/L5/2449:2454, 1/L5/2463:2477, 1/L5/2497:2506 | No text annotation | ||
J3_9G8M_014 | 1/L5/2547:2554, 1/L5/2569:2573, 1/L5/2755:2768 | No text annotation | ||
J3_9G8M_015 | 1/L5/2573:2574, 1/L5/2583:2587, 1/L5/2754:2755 | No text annotation | homologous J3_8C3A_054 NA | |
J3_9G8M_016 | 1/L5/2596:2600, 1/L5/2735:2736, 1/L5/2740:2745 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
J3_9G8M_017 | 1/L5/3694:3696, 1/L5/3750:3778, 1/L5/3812:3817 | No text annotation | ||
J3_9G8M_018 | 1/L5/3935:3937, 1/L5/4072:4076, 1/L5/4166:4171 | No text annotation | geometric J3_7A0S_009 J3_17460.1 | |
J3_9G8M_019 | 1/L5/4226:4228, 1/L5/4329:4340, 1/L5/4368:4373 | No text annotation | homologous J3_8P9A_061 J3_04772.1 | |
J3_9G8M_020 | 1/L5/4239:4241, 1/L5/4265:4267, 1/L5/4276:4281 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
J3_9G8M_021 | 1/L5/4461:4464, 1/L5/4489:4491, 1/L5/4505:4511 | No text annotation | homologous J3_8C3A_011 NA | |
J3_9G8M_022 | 1/L5/4746:4752, 1/L5/4877:4882, 1/L5/4933:4950 | No text annotation | ||
J3_9G8M_023 | 1/L5/4968:4970, 1/L5/4984:4989, 1/L5/5058:5061 | No text annotation | ||
J3_9G8M_024 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
J3_9G8M_025 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
J3_9G8M_026 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_4V88_078 NA | |
J3_9G8M_027 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
J3_9G8M_028 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
J3_9G8M_029 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
J3_9G8M_030 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
J3_9G8M_035 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
J3_9G8M_036 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8C3A_085 NA | |
J3_9G8M_037 | 1/S2/1391:1395, 1/S2/1450:1453, 1/S2/1475:1479 | No text annotation | ||
J3_9G8M_038 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
J4_9G8M_001 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
J4_9G8M_002 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
J4_9G8M_003 | 1/L5/980:984, 1/L5/1070:1074, 1/L5/1236:1246, 1/L5/1264:1274 | No text annotation | ||
J4_9G8M_004 | 1/L5/2363:2369, 1/L5/2387:2389, 1/L5/2822:2827, 1/L5/3854:3855 | No text annotation | ||
J4_9G8M_005 | 1/L5/2404:2408, 1/L5/2432:2437, 1/L5/2536:2537, 1/L5/2775:2782 | No text annotation | homologous J4_8C3A_004 NA | |
J4_9G8M_006 | 1/L5/2616:2617, 1/L5/2635:2640, 1/L5/2690:2696, 1/L5/2716:2717 | No text annotation | ||
J4_9G8M_007 | 1/L5/3632:3636, 1/L5/3648:3652, 1/L5/3688:3692, 1/L5/3819:3824 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
J4_9G8M_008 | 1/L5/4229:4233, 1/L5/4287:4289, 1/L5/4316:4317, 1/L5/4326:4328 | No text annotation | ||
J4_9G8M_009 | 1/L5/4585:4588, 1/L5/4618:4619, 1/L5/4674:4676, 1/L5/4710:4713 | No text annotation | ||
J4_9G8M_010 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8C3A_021 NA | |
J4_9G8M_011 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
J5_9G8M_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | homologous J5_8P9A_010 J5_27223.1 | |
J5_9G8M_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2286:2288, 1/L5/2343:2349 | No text annotation | homologous J5_8C3A_002 NA | |
J5_9G8M_003 | 1/L5/2853:2861, 1/L5/2885:2886, 1/L5/3611:3612, 1/L5/3616:3624, 1/L5/3833:3835 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
J5_9G8M_004 | 1/L5/3900:3908, 1/L5/4390:4398, 1/L5/4442:4451, 1/L5/4526:4532, 1/L5/4550:4556 | No text annotation | ||
J5_9G8M_005 | 1/L5/3918:3921, 1/L5/4186:4189, 1/L5/4202:4203, 1/L5/4225:4226, 1/L5/4373:4379 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
J5_9G8M_006 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:569, 1/S2/581:595, 1/S2/641:644 | No text annotation | ||
J5_9G8M_007 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:461, 1/S2/468:474 | No text annotation | ||
J5_9G8M_008 | 1/S2/123:145, 1/S2/174:186, 1/S2/213:219, 1/S2/302:314, 1/S2/336:341 | No text annotation | ||
J6_9G8M_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
J6_9G8M_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
J6_9G8M_003 | 1/L5/3918:3921, 1/L5/4186:4189, 1/L5/4202:4203, 1/L5/4225:4228, 1/L5/4329:4340, 1/L5/4368:4379 | No text annotation | ||
J7_9G8M_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1850:1853, 1/L5/1877:1882, 1/L5/1893:1897, 1/L5/2075:2076, 1/L5/2276:2281 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_9G8M_007 | No text annotation | ||
J3_9G8M_031 | No text annotation | ||
J3_9G8M_032 | No text annotation | ||
J3_9G8M_033 | No text annotation | ||
J3_9G8M_034 | No text annotation | ||
J3_9G8M_039 | No text annotation |
Coloring options: