HL_9G8M_012

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

ACUGUCCCCAGU

Length

12 nucleotides

Bulged bases

9G8M|1|L5|C|1180, 9G8M|1|L5|C|1181, 9G8M|1|L5|C|1182, 9G8M|1|L5|A|1184

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|A|1175
9G8M|1|L5|C|1176
9G8M|1|L5|U|1177
9G8M|1|L5|G|1178
9G8M|1|L5|U|1179
9G8M|1|L5|C|1180
9G8M|1|L5|C|1181
9G8M|1|L5|C|1182
9G8M|1|L5|C|1183
9G8M|1|L5|A|1184
9G8M|1|L5|G|1185
9G8M|1|L5|U|1186

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein uL16-like