HL_9G8M_016

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_016 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0934

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9G8M|1|L5|U|1389
9G8M|1|L5|G|1390
9G8M|1|L5|A|1391
9G8M|1|L5|A|1392
9G8M|1|L5|G|1393
9G8M|1|L5|G|1394

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36