HL_9G8M_017

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCGCGCUCGC

Length

10 nucleotides

Bulged bases

9G8M|1|L5|G|1408, 9G8M|1|L5|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|1404
9G8M|1|L5|C|1405
9G8M|1|L5|G|1406
9G8M|1|L5|C|1407
9G8M|1|L5|G|1408
9G8M|1|L5|C|1409
9G8M|1|L5|U|1410
9G8M|1|L5|C|1411
9G8M|1|L5|G|1412
9G8M|1|L5|C|1413

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain La

60S ribosomal protein L27a

Chain Lb

60S ribosomal protein L29