HL_9G8M_018

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCUCUCCAGUCCGC

Length

15 nucleotides

Bulged bases

9G8M|1|L5|C|1439, 9G8M|1|L5|G|1444

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|1435
9G8M|1|L5|C|1436
9G8M|1|L5|C|1437
9G8M|1|L5|U|1438
9G8M|1|L5|C|1439
9G8M|1|L5|U|1440
9G8M|1|L5|C|1441
9G8M|1|L5|C|1442
9G8M|1|L5|A|1443
9G8M|1|L5|G|1444
9G8M|1|L5|U|1445
9G8M|1|L5|C|1446
9G8M|1|L5|C|1447
9G8M|1|L5|G|1448
9G8M|1|L5|C|1449

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LF

Large ribosomal subunit protein uL30

Chain LQ

60S ribosomal protein L18