HL_9G8M_024

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCUUGGGGCCGAAACGAUCUCAAC

Length

25 nucleotides

Bulged bases

9G8M|1|L5|U|1754, 9G8M|1|L5|C|1755, 9G8M|1|L5|U|1756, 9G8M|1|L5|G|1760, 9G8M|1|L5|A|1765, 9G8M|1|L5|A|1766, 9G8M|1|L5|A|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|1753
9G8M|1|L5|U|1754
9G8M|1|L5|C|1755
9G8M|1|L5|U|1756
9G8M|1|L5|U|1757
9G8M|1|L5|G|1758
9G8M|1|L5|G|1759
9G8M|1|L5|G|1760
9G8M|1|L5|G|1761
9G8M|1|L5|C|1762
9G8M|1|L5|C|1763
9G8M|1|L5|G|1764
9G8M|1|L5|A|1765
9G8M|1|L5|A|1766
9G8M|1|L5|A|1767
9G8M|1|L5|C|1768
9G8M|1|L5|G|1769
9G8M|1|L5|A|1770
9G8M|1|L5|U|1771
9G8M|1|L5|C|1772
9G8M|1|L5|U|1773
9G8M|1|L5|C|1774
9G8M|1|L5|A|1775
9G8M|1|L5|A|1776
9G8M|1|L5|C|1777

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein uL16-like

Chain SP

40S ribosomal protein S15