Loop HL_9G8M

3D structure

PDB id: 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
Description: human 80S ribosome bound by a SKI2-exosome complex
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Loop

Sequence: GACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACC
Length: 51 nucleotides
Bulged bases: 9G8M|1|L5|G|1973, 9G8M|1|L5|U|1978, 9G8M|1|L5|G|1979, 9G8M|1|L5|G|1986, 9G8M|1|L5|G|1987, 9G8M|1|L5|A|1988, 9G8M|1|L5|A|1989, 9G8M|1|L5|U|1990, 9G8M|1|L5|A|2007
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9G8M|1|L5|G|1967
9G8M|1|L5|A|1968
9G8M|1|L5|C|1969
9G8M|1|L5|G|1970
9G8M|1|L5|G|1971
9G8M|1|L5|U|1972
9G8M|1|L5|G|1973
9G8M|1|L5|G|1974
9G8M|1|L5|C|1975
9G8M|1|L5|C|1976
9G8M|1|L5|A|1977
9G8M|1|L5|U|1978
9G8M|1|L5|G|1979
9G8M|1|L5|G|1980
9G8M|1|L5|A|1981
9G8M|1|L5|A|1982
9G8M|1|L5|G|1983
9G8M|1|L5|U|1984
9G8M|1|L5|C|1985
9G8M|1|L5|G|1986
9G8M|1|L5|G|1987
9G8M|1|L5|A|1988
9G8M|1|L5|A|1989
9G8M|1|L5|U|1990
9G8M|1|L5|C|1991
9G8M|1|L5|C|1992
9G8M|1|L5|G|1993
9G8M|1|L5|C|1994
9G8M|1|L5|U|1995
9G8M|1|L5|A|1996
9G8M|1|L5|A|1997
9G8M|1|L5|G|1998
9G8M|1|L5|G|1999
9G8M|1|L5|A|2000
9G8M|1|L5|G|2001
9G8M|1|L5|U|2002
9G8M|1|L5|G|2003
9G8M|1|L5|U|2004
9G8M|1|L5|G|2005
9G8M|1|L5|U|2006
9G8M|1|L5|A|2007
9G8M|1|L5|A|2008
9G8M|1|L5|C|2009
9G8M|1|L5|A|2010
9G8M|1|L5|A|2011
9G8M|1|L5|C|2012
9G8M|1|L5|U|2013
9G8M|1|L5|C|2014
9G8M|1|L5|A|2015
9G8M|1|L5|C|2016
9G8M|1|L5|C|2017

Current chains

Chain L5: 28S ribosomal RNA

Nearby chains

Chain LI: Ribosomal protein uL16-like
Chain Lm: Ubiquitin-60S ribosomal protein L40

HL_9G8M_028