HL_9G8M_029

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_029 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.0915

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9G8M|1|L5|C|2315
9G8M|1|L5|G|2316
9G8M|1|L5|C|2317
9G8M|1|L5|G|2318
9G8M|1|L5|G|2319
9G8M|1|L5|G|2320

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Le

60S ribosomal protein L32

Chain Lr

60S ribosomal protein L28