HL_9G8M_032

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAGCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_032 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.2155

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

9G8M|1|L5|C|2456
9G8M|1|L5|G|2457
9G8M|1|L5|A|2458
9G8M|1|L5|G|2459
9G8M|1|L5|C|2460
9G8M|1|L5|G|2461

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LN

60S ribosomal protein L15

Chain Lj

60S ribosomal protein L37