HL_9G8M_033

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUGGCCUCCGUUG

Length

15 nucleotides

Bulged bases

9G8M|1|L5|G|2484, 9G8M|1|L5|C|2486, 9G8M|1|L5|C|2487, 9G8M|1|L5|U|2488

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|C|2480
9G8M|1|L5|G|2481
9G8M|1|L5|A|2482
9G8M|1|L5|U|2483
9G8M|1|L5|G|2484
9G8M|1|L5|G|2485
9G8M|1|L5|C|2486
9G8M|1|L5|C|2487
9G8M|1|L5|U|2488
9G8M|1|L5|C|2489
9G8M|1|L5|C|2490
9G8M|1|L5|G|2491
9G8M|1|L5|U|2492
9G8M|1|L5|U|2493
9G8M|1|L5|G|2494

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LX

60S ribosomal protein L23a