HL_9G8M_034
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 9G8M|1|L5|U|2528, 9G8M|1|L5|C|2529
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G8M_034 not in the Motif Atlas
- Homologous match to HL_8P9A_146
- Geometric discrepancy: 0.1322
- The information below is about HL_8P9A_146
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_77449.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9G8M|1|L5|G|2521
9G8M|1|L5|U|2522
9G8M|1|L5|U|2523
9G8M|1|L5|C|2524
9G8M|1|L5|A|2525
9G8M|1|L5|G|2526
9G8M|1|L5|A|2527
9G8M|1|L5|U|2528
9G8M|1|L5|C|2529
9G8M|1|L5|C|2530
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LR
- 60S ribosomal protein L19
- Chain LX
- 60S ribosomal protein L23a
- Chain Lg
- 60S ribosomal protein L34
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