HL_9G8M_035

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_035 not in the Motif Atlas

Geometric match to HL_7U4A_003

Geometric discrepancy: 0.1417

The information below is about HL_7U4A_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9G8M|1|L5|C|2559
9G8M|1|L5|G|2560
9G8M|1|L5|C|2561
9G8M|1|L5|G|2562
9G8M|1|L5|A|2563
9G8M|1|L5|G|2564

Current chains

Chain L5

28S ribosomal RNA

Nearby chains