HL_9G8M_039

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

9G8M|1|L5|U|2705, 9G8M|1|L5|U|2706, 9G8M|1|L5|C|2707, 9G8M|1|L5|G|2709

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_039 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.2764

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

9G8M|1|L5|C|2702
9G8M|1|L5|G|2703
9G8M|1|L5|G|2704
9G8M|1|L5|U|2705
9G8M|1|L5|U|2706
9G8M|1|L5|C|2707
9G8M|1|L5|C|2708
9G8M|1|L5|G|2709
9G8M|1|L5|G|2710

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain LX

60S ribosomal protein L23a