HL_9G8M_042

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

9G8M|1|L5|C|2812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_042 not in the Motif Atlas

Homologous match to HL_8P9A_153

Geometric discrepancy: 0.3844

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9G8M|1|L5|U|2808
9G8M|1|L5|G|2809
9G8M|1|L5|A|2810
9G8M|1|L5|A|2811
9G8M|1|L5|C|2812
9G8M|1|L5|A|2813
9G8M|1|L5|G|2814

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19