HL_9G8M_049

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9G8M|1|L5|A|3874, 9G8M|1|L5|A|3875, 9G8M|1|L5|C|3876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_049 not in the Motif Atlas

Homologous match to HL_8P9A_162

Geometric discrepancy: 0.1041

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

9G8M|1|L5|G|3871
9G8M|1|L5|G|3872
9G8M|1|L5|G|3873
9G8M|1|L5|A|3874
9G8M|1|L5|A|3875
9G8M|1|L5|C|3876
9G8M|1|L5|G|3877
9G8M|1|L5|G|3878
9G8M|1|L5|G|3879
9G8M|1|L5|C|3880

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32