HL_9G8M_051

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9G8M|1|L5|G|4193

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_051 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.0886

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9G8M|1|L5|C|4191
9G8M|1|L5|U|4192
9G8M|1|L5|G|4193
9G8M|1|L5|G|4194
9G8M|1|L5|G|4195
9G8M|1|L5|G|4196
9G8M|1|L5|C|4197
9G8M|1|L5|G|4198
9G8M|1|L5|G|4199

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lb

60S ribosomal protein L29