HL_9G8M_054

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAGAAGGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_054 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2884

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

9G8M|1|L5|G|4267
9G8M|1|L5|C|4268
9G8M|1|L5|A|4269
9G8M|1|L5|G|4270
9G8M|1|L5|A|4271
9G8M|1|L5|A|4272
9G8M|1|L5|G|4273
9G8M|1|L5|G|4274
9G8M|1|L5|G|4275
9G8M|1|L5|C|4276

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21