HL_9G8M_058

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_058 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.1505

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9G8M|1|L5|C|4415
9G8M|1|L5|G|4416
9G8M|1|L5|U|4417
9G8M|1|L5|U|4418
9G8M|1|L5|C|4419
9G8M|1|L5|A|4420
9G8M|1|L5|U|4421
9G8M|1|L5|A|4422
9G8M|1|L5|G|4423

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain Lm

Ubiquitin-60S ribosomal protein L40