HL_9G8M_064

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9G8M|1|L5|G|4692, 9G8M|1|L5|C|4696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_064 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1286

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9G8M|1|L5|C|4686
9G8M|1|L5|U|4687
9G8M|1|L5|G|4688
9G8M|1|L5|A|4689
9G8M|1|L5|A|4690
9G8M|1|L5|C|4691
9G8M|1|L5|G|4692
9G8M|1|L5|C|4693
9G8M|1|L5|C|4694
9G8M|1|L5|U|4695
9G8M|1|L5|C|4696
9G8M|1|L5|U|4697
9G8M|1|L5|A|4698
9G8M|1|L5|A|4699
9G8M|1|L5|G|4700

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40