HL_9G8M_067

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9G8M|1|L5|C|5021, 9G8M|1|L5|U|5024, 9G8M|1|L5|C|5025

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_067 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.274

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9G8M|1|L5|C|5019
9G8M|1|L5|U|5020
9G8M|1|L5|C|5021
9G8M|1|L5|C|5022
9G8M|1|L5|C|5023
9G8M|1|L5|U|5024
9G8M|1|L5|C|5025
9G8M|1|L5|G|5026

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8