HL_9G8M_074

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUCCUCC

Length

9 nucleotides

Bulged bases

9G8M|1|L8|C|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_074 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3122

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9G8M|1|L8|G|121
9G8M|1|L8|G|122
9G8M|1|L8|U|123
9G8M|1|L8|U|124
9G8M|1|L8|C|125
9G8M|1|L8|C|126
9G8M|1|L8|U|127
9G8M|1|L8|C|128
9G8M|1|L8|C|129

Current chains

Chain L8

5.8S ribosomal RNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LX

60S ribosomal protein L23a