HL_9G8M_078

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

9G8M|1|S2|U|198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_078 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2149

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

9G8M|1|S2|C|195
9G8M|1|S2|C|196
9G8M|1|S2|U|197
9G8M|1|S2|U|198
9G8M|1|S2|C|199
9G8M|1|S2|G|200
9G8M|1|S2|C|201
9G8M|1|S2|G|202
9G8M|1|S2|G|203
9G8M|1|S2|G|204

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8