HL_9G8M_081

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

9G8M|1|S2|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_081 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3594

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

9G8M|1|S2|G|377
9G8M|1|S2|U|378
9G8M|1|S2|C|379
9G8M|1|S2|G|380
9G8M|1|S2|C|381
9G8M|1|S2|C|382
9G8M|1|S2|G|383
9G8M|1|S2|U|384
9G8M|1|S2|G|385
9G8M|1|S2|C|386
9G8M|1|S2|C|387

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

40S ribosomal protein S8

Chain SL

40S ribosomal protein S11