HL_9G8M_086
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGACUCUUUCGAGGCCC
- Length
- 17 nucleotides
- Bulged bases
- 9G8M|1|S2|C|537, 9G8M|1|S2|C|539, 9G8M|1|S2|U|541, 9G8M|1|S2|U|542, 9G8M|1|S2|C|543
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9G8M|1|S2|G|534
9G8M|1|S2|G|535
9G8M|1|S2|A|536
9G8M|1|S2|C|537
9G8M|1|S2|U|538
9G8M|1|S2|C|539
9G8M|1|S2|U|540
9G8M|1|S2|U|541
9G8M|1|S2|U|542
9G8M|1|S2|C|543
9G8M|1|S2|G|544
9G8M|1|S2|A|545
9G8M|1|S2|G|546
9G8M|1|S2|G|547
9G8M|1|S2|C|548
9G8M|1|S2|C|549
9G8M|1|S2|C|550
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Helicase SKI2W
- Chain SJ
- 40S ribosomal protein S9
- Chain Se
- 40S ribosomal protein S30
Coloring options: