HL_9G8M_090

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCCCGAGCCGC

Length

11 nucleotides

Bulged bases

9G8M|1|S2|G|836, 9G8M|1|S2|G|838, 9G8M|1|S2|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_090 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1778

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9G8M|1|S2|G|832
9G8M|1|S2|C|833
9G8M|1|S2|C|834
9G8M|1|S2|C|835
9G8M|1|S2|G|836
9G8M|1|S2|A|837
9G8M|1|S2|G|838
9G8M|1|S2|C|839
9G8M|1|S2|C|840
9G8M|1|S2|G|841
9G8M|1|S2|C|842

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SY

40S ribosomal protein S24