HL_9G8M_092

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_092 not in the Motif Atlas

Homologous match to HL_8P9A_209

Geometric discrepancy: 0.2053

The information below is about HL_8P9A_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9G8M|1|S2|A|957
9G8M|1|S2|G|958
9G8M|1|S2|G|959
9G8M|1|S2|U|960
9G8M|1|S2|G|961
9G8M|1|S2|A|962
9G8M|1|S2|A|963
9G8M|1|S2|A|964
9G8M|1|S2|U|965
9G8M|1|S2|U|966

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SO

40S ribosomal protein S14