HL_9G8M_099
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CACGGACAGGAUUGACAGAUUGAUAGCUCUUUCUCGAUUCCGUG
- Length
- 44 nucleotides
- Bulged bases
- 9G8M|1|S2|C|1283, 9G8M|1|S2|G|1285, 9G8M|1|S2|A|1291, 9G8M|1|S2|U|1300, 9G8M|1|S2|U|1306
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9G8M|1|S2|C|1277
9G8M|1|S2|A|1278
9G8M|1|S2|C|1279
9G8M|1|S2|G|1280
9G8M|1|S2|G|1281
9G8M|1|S2|A|1282
9G8M|1|S2|C|1283
9G8M|1|S2|A|1284
9G8M|1|S2|G|1285
9G8M|1|S2|G|1286
9G8M|1|S2|A|1287
9G8M|1|S2|U|1288
9G8M|1|S2|U|1289
9G8M|1|S2|G|1290
9G8M|1|S2|A|1291
9G8M|1|S2|C|1292
9G8M|1|S2|A|1293
9G8M|1|S2|G|1294
9G8M|1|S2|A|1295
9G8M|1|S2|U|1296
9G8M|1|S2|U|1297
9G8M|1|S2|G|1298
9G8M|1|S2|A|1299
9G8M|1|S2|U|1300
9G8M|1|S2|A|1301
9G8M|1|S2|G|1302
9G8M|1|S2|C|1303
9G8M|1|S2|U|1304
9G8M|1|S2|C|1305
9G8M|1|S2|U|1306
9G8M|1|S2|U|1307
9G8M|1|S2|U|1308
9G8M|1|S2|C|1309
9G8M|1|S2|U|1310
9G8M|1|S2|C|1311
9G8M|1|S2|G|1312
9G8M|1|S2|A|1313
9G8M|1|S2|U|1314
9G8M|1|S2|U|1315
9G8M|1|S2|C|1316
9G8M|1|S2|C|1317
9G8M|1|S2|G|1318
9G8M|1|S2|U|1319
9G8M|1|S2|G|1320
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Helicase SKI2W
- Chain SK
- 40S ribosomal protein S10
- Chain SM
- 40S ribosomal protein S12
- Chain SP
- 40S ribosomal protein S15
- Chain Sd
- 40S ribosomal protein S29
- Chain Sf
- Ubiquitin
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