HL_9G8M_105

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAUUGCAAUUAUUCC

Length

16 nucleotides

Bulged bases

9G8M|1|S2|U|1621, 9G8M|1|S2|U|1622, 9G8M|1|S2|A|1623

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|S2|G|1612
9G8M|1|S2|G|1613
9G8M|1|S2|A|1614
9G8M|1|S2|U|1615
9G8M|1|S2|U|1616
9G8M|1|S2|G|1617
9G8M|1|S2|C|1618
9G8M|1|S2|A|1619
9G8M|1|S2|A|1620
9G8M|1|S2|U|1621
9G8M|1|S2|U|1622
9G8M|1|S2|A|1623
9G8M|1|S2|U|1624
9G8M|1|S2|U|1625
9G8M|1|S2|C|1626
9G8M|1|S2|C|1627

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SP

40S ribosomal protein S15

Chain SS

40S ribosomal protein S18

Chain ST

40S ribosomal protein S19

Chain Sd

40S ribosomal protein S29