HL_9G8M_111

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GCAGCCCC

Length

8 nucleotides

Bulged bases

9G8M|1|X|C|113, 9G8M|1|X|C|116, 9G8M|1|X|C|117

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|X|G|112
9G8M|1|X|C|113
9G8M|1|X|A|114
9G8M|1|X|G|115
9G8M|1|X|C|116
9G8M|1|X|C|117
9G8M|1|X|C|118
9G8M|1|X|C|119

Current chains

Chain X

CrPV-IRES RNA

Nearby chains

Chain SF

40S ribosomal protein S5

Chain SZ

40S ribosomal protein S25