HL_9G8M_113

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G8M_113 not in the Motif Atlas

Homologous match to HL_8CRE_056

Geometric discrepancy: 0.1434

The information below is about HL_8CRE_056

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

9G8M|1|L5|C|4268
9G8M|1|L5|A|4269
9G8M|1|L5|G|4270
9G8M|1|L5|A|4271
9G8M|1|L5|A|4272
9G8M|1|L5|G|4273
9G8M|1|L5|G|4274
9G8M|1|L5|G|4275

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21