HL_9G8O_009
3D structure
- PDB id
- 9G8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 40S ribosome bound by a SKI238-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 9G8O|1|S2|C|450, 9G8O|1|S2|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G8O_009 not in the Motif Atlas
- Homologous match to HL_8P9A_199
- Geometric discrepancy: 0.1233
- The information below is about HL_8P9A_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86432.1
- Basepair signature
- cWW-tWH-tWH-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9G8O|1|S2|C|441
9G8O|1|S2|C|442
9G8O|1|S2|U|443
9G8O|1|S2|G|444
9G8O|1|S2|A|445
9G8O|1|S2|G|446
9G8O|1|S2|A|447
9G8O|1|S2|A|448
9G8O|1|S2|A|449
9G8O|1|S2|C|450
9G8O|1|S2|G|451
9G8O|1|S2|G|452
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SY
- 40S ribosomal protein S24
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