HL_9GFT_034
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GFT_034 not in the Motif Atlas
- Homologous match to HL_6GSK_203
- Geometric discrepancy: 0.1384
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9GFT|1|A|A|31
9GFT|1|A|U|32
9GFT|1|A|U|33
9GFT|1|A|G|34
9GFT|1|A|A|35
9GFT|1|A|A|36
9GFT|1|A|A|37
9GFT|1|A|A|38
9GFT|1|A|U|39
Current chains
- Chain A
- A-site tRNA
Nearby chains
- Chain 0
- Small subunit ribosomal RNA; SSU rRNA
- Chain E
- Small ribosomal subunit protein uS12
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain w
- messenger RNA
Coloring options: