HL_9GFT_063

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9GFT|1|AA|C|1136, 9GFT|1|AA|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_063 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2951

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

9GFT|1|AA|G|1134
9GFT|1|AA|U|1135
9GFT|1|AA|C|1136
9GFT|1|AA|C|1137
9GFT|1|AA|G|1138
9GFT|1|AA|G|1139
9GFT|1|AA|C|1140

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

Small ribosomal subunit protein uS9