HL_9GFT_071
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGGCAUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GFT_071 not in the Motif Atlas
- Homologous match to HL_9DFC_104
- Geometric discrepancy: 0.1206
- The information below is about HL_9DFC_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9GFT|1|AU|C|31
9GFT|1|AU|A|32
9GFT|1|AU|U|33
9GFT|1|AU|G|34
9GFT|1|AU|G|35
9GFT|1|AU|C|36
9GFT|1|AU|A|37
9GFT|1|AU|U|38
9GFT|1|AU|G|39
Current chains
- Chain AU
- P-site tRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- Small ribosomal subunit protein uS9
- Chain w
- messenger RNA
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