HL_9GFT_072
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9GFT_072 not in the Motif Atlas
- Homologous match to HL_3WQY_003
- Geometric discrepancy: 0.1656
- The information below is about HL_3WQY_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.7
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9GFT|1|AU|G|53
9GFT|1|AU|U|54
9GFT|1|AU|U|55
9GFT|1|AU|C|56
9GFT|1|AU|G|57
9GFT|1|AU|A|58
9GFT|1|AU|U|59
9GFT|1|AU|C|60
9GFT|1|AU|C|61
Current chains
- Chain AU
- P-site tRNA
Nearby chains
- Chain AV
- Large subunit ribosomal RNA; LSU rRNA
- Chain Aa
- Large ribosomal subunit protein uL5
- Chain Ah
- 50S ribosomal protein L16
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