HL_9GFT_080

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_080 not in the Motif Atlas

Homologous match to HL_4WF9_008

Geometric discrepancy: 0.1342

The information below is about HL_4WF9_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

9GFT|1|AV|C|246
9GFT|1|AV|G|247
9GFT|1|AV|G|248
9GFT|1|AV|C|249
9GFT|1|AV|G|250
9GFT|1|AV|A|251
9GFT|1|AV|G|252

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ag

Large ribosomal subunit protein uL15

Chain As

Large ribosomal subunit protein bL28

Chain Ay

Large ribosomal subunit protein bL35