HL_9GFT_082

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUAC

Length

5 nucleotides

Bulged bases

9GFT|1|AV|U|321, 9GFT|1|AV|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_082 not in the Motif Atlas

Homologous match to HL_9DFE_010

Geometric discrepancy: 0.1072

The information below is about HL_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

9GFT|1|AV|G|319
9GFT|1|AV|A|320
9GFT|1|AV|U|321
9GFT|1|AV|A|322
9GFT|1|AV|C|323

Current chains

Chain AV

23S RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4

Chain Ap

Large ribosomal subunit protein uL24