3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAUAC
Length
5 nucleotides
Bulged bases
9GFT|1|AV|U|321, 9GFT|1|AV|A|322
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GFT_082 not in the Motif Atlas
Homologous match to HL_9DFE_010
Geometric discrepancy: 0.1072
The information below is about HL_9DFE_010
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.5
Basepair signature
cWW-F
Number of instances in this motif group
19

Unit IDs

9GFT|1|AV|G|319
9GFT|1|AV|A|320
9GFT|1|AV|U|321
9GFT|1|AV|A|322
9GFT|1|AV|C|323

Current chains

Chain AV
23S RNA

Nearby chains

Chain AZ
Large ribosomal subunit protein uL4
Chain Ap
Large ribosomal subunit protein uL24

Coloring options:


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