HL_9GFT_085

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

9GFT|1|AV|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_085 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1091

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9GFT|1|AV|G|410
9GFT|1|AV|G|411
9GFT|1|AV|A|412
9GFT|1|AV|C|413
9GFT|1|AV|C|414
9GFT|1|AV|A|415
9GFT|1|AV|U|416
9GFT|1|AV|C|417

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ag

Large ribosomal subunit protein uL15