3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9GFT_086 not in the Motif Atlas
Homologous match to HL_4WF9_015
Geometric discrepancy: 0.0948
The information below is about HL_4WF9_015
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

9GFT|1|AV|C|462
9GFT|1|AV|G|463
9GFT|1|AV|U|464
9GFT|1|AV|G|465
9GFT|1|AV|A|466
9GFT|1|AV|G|467

Current chains

Chain AV
23S RNA

Nearby chains

Chain AZ
Large ribosomal subunit protein uL4
Chain Ax
Large ribosomal subunit protein bL34

Coloring options:


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