HL_9GFT_090

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

9GFT|1|AV|A|613, 9GFT|1|AV|A|614, 9GFT|1|AV|U|615

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_090 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.4785

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

9GFT|1|AV|C|611
9GFT|1|AV|G|612
9GFT|1|AV|A|613
9GFT|1|AV|A|614
9GFT|1|AV|U|615
9GFT|1|AV|A|616
9GFT|1|AV|G|617

Current chains

Chain AV

23S RNA

Nearby chains

Chain AZ

Large ribosomal subunit protein uL4