HL_9GFT_097

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

9GFT|1|AV|U|958, 9GFT|1|AV|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_097 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1892

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9GFT|1|AV|U|955
9GFT|1|AV|G|956
9GFT|1|AV|C|957
9GFT|1|AV|U|958
9GFT|1|AV|A|959
9GFT|1|AV|A|960
9GFT|1|AV|C|961
9GFT|1|AV|G|962

Current chains

Chain AV

23S RNA

Nearby chains

Chain AW

5S ribosomal RNA; 5S rRNA

Chain Ah

50S ribosomal protein L16