HL_9GFT_101

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

9GFT|1|AV|U|1174, 9GFT|1|AV|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_101 not in the Motif Atlas

Geometric match to HL_8P9A_231

Geometric discrepancy: 0.3886

The information below is about HL_8P9A_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13189.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

9GFT|1|AV|C|1172
9GFT|1|AV|U|1173
9GFT|1|AV|U|1174
9GFT|1|AV|A|1175
9GFT|1|AV|U|1176
9GFT|1|AV|G|1177

Current chains

Chain AV

23S RNA

Nearby chains