HL_9GFT_106

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

9GFT|1|AV|U|1396, 9GFT|1|AV|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_106 not in the Motif Atlas

Homologous match to HL_5J7L_168

Geometric discrepancy: 0.1941

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9GFT|1|AV|G|1389
9GFT|1|AV|U|1390
9GFT|1|AV|U|1391
9GFT|1|AV|A|1392
9GFT|1|AV|A|1393
9GFT|1|AV|U|1394
9GFT|1|AV|A|1395
9GFT|1|AV|U|1396
9GFT|1|AV|U|1397
9GFT|1|AV|C|1398

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ao

Large ribosomal subunit protein uL23