HL_9GFT_113

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9GFT|1|AV|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_113 not in the Motif Atlas

Homologous match to HL_5J7L_175

Geometric discrepancy: 0.1171

The information below is about HL_5J7L_175

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9GFT|1|AV|C|1691
9GFT|1|AV|U|1692
9GFT|1|AV|U|1693
9GFT|1|AV|C|1694
9GFT|1|AV|G|1695
9GFT|1|AV|G|1696

Current chains

Chain AV

23S RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AX

Large ribosomal subunit protein uL2