HL_9GFT_132

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9GFT|1|AV|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_132 not in the Motif Atlas

Homologous match to HL_9DFE_059

Geometric discrepancy: 0.1953

The information below is about HL_9DFE_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

9GFT|1|AV|U|2528
9GFT|1|AV|G|2529
9GFT|1|AV|A|2530
9GFT|1|AV|A|2531
9GFT|1|AV|G|2532
9GFT|1|AV|U|2533
9GFT|1|AV|A|2534
9GFT|1|AV|G|2535

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ab

Large ribosomal subunit protein uL6

Chain Az

Large ribosomal subunit protein bL36A