HL_9GFT_139

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9GFT|1|AV|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9GFT_139 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.146

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9GFT|1|AV|G|2819
9GFT|1|AV|A|2820
9GFT|1|AV|A|2821
9GFT|1|AV|G|2822
9GFT|1|AV|A|2823
9GFT|1|AV|C|2824
9GFT|1|AV|G|2825
9GFT|1|AV|A|2826
9GFT|1|AV|C|2827

Current chains

Chain AV

23S RNA

Nearby chains

Chain AY

50S ribosomal protein L3

Chain Ai

Large ribosomal subunit protein bL17

Chain Ak

Large ribosomal subunit protein bL19